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180 Open 162 Closed
180 Open 162 Closed
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Issues list

Not dealing well with HETATM
#387 opened Nov 27, 2024 by jeversbioprodict
1
Getting BLAST-like e-value for TM-align?
#386 opened Nov 26, 2024 by meltzj
1
feature question: option to switch to mmseq2-gpu accelerated version
#384 opened Nov 25, 2024 by phil-gusev
Use of '--cluster-reassign 1' and '--alignment-type 1' simultaneously throws an error about the parameter '--lddt-threshold'
#383 opened Nov 18, 2024 by markcharder
API search error
#380 opened Nov 2, 2024 by dmath21
Expose increasing sensitivity search in FS
#379 opened Nov 2, 2024 by milot-mirdita
FoldSeek Score between two protein structures
#377 opened Oct 30, 2024 by JamberFX
1
Duplicate Foldseek hits for PDB 1hxz chain D searching pdb100
#376 opened Oct 29, 2024 by tomgoddard
Cluster 3di fasta file
#375 opened Oct 27, 2024 by schmigle
1
More columns to HTML formatted output
#374 opened Oct 25, 2024 by jakewendt
Discrepancy between results from “foldseek prefilter” and “foldseek search”
#373 opened Oct 23, 2024 by kirinC0714
2
Sort the tabs when output in HTML format
#372 opened Oct 22, 2024 by jakewendt
Highly similar structures are clustered into separate groups or result in error
#371 opened Oct 22, 2024 by NatureGeorge
Option to hide queries with no matches in HTML output
#370 opened Oct 22, 2024 by jakewendt
Guidance on how to download the reported PDBs
#369 opened Oct 17, 2024 by anar-rzayev
Guidance to search small fragments (8-mer)
#368 opened Oct 15, 2024 by alexproteomics
2
why easy-cluster alignment results are slightly different from DaliLite.v5 z scores? [not bug]
#365 opened Oct 14, 2024 by Huilin-Li
1
Cluster based on e-value/tmscore ?
#364 opened Oct 11, 2024 by Wangchentong
3
identify shared domain or conformation between 2 pdb files
#363 opened Oct 7, 2024 by xjhzjucas
Clustering ProstT5 DB?
#361 opened Oct 1, 2024 by HaimAshk
4
database downloading error, Network is unreachable.
#360 opened Sep 30, 2024 by Liao-PRIC
1
Multimercluster error in tutorial
#357 opened Sep 24, 2024 by sirius777coder
@sooyoung-cha @rachelse
2
Coverage Mode Option Not Affecting TM Scores in HTML Output
#355 opened Sep 22, 2024 by khatrics16
How to get 3di sequence MSA?
#352 opened Sep 19, 2024 by code4luck
1
In my created database, proteins are complexes, and they have DNA/RNA within their structure. Will these DNA/RNA influence the structure-based search/cluster?
#351 opened Sep 19, 2024 by Huilin-Li
ProTip! What’s not been updated in a month: updated:<2024-10-27.