WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
R package for DNA methylation analysis
A tool for discovering Differentially Methylated Regions
R package for DNA Methylation Analysis (and Gene Expression Integration) for Illumina Infinium Array and BS-Seq Data
Differential methylation analysis pipeline using Illumina 450k array data from GEO (GSE42861). Includes preprocessing, QC, normalization, limma-based DMP detection, annotation, and visualization (volcano plot, MA plot, PCA). Built in R for reproducibility and educational use.
Pipeline for differential DNA methylation analysis
The MeRIP-seq data analysis tutorial is structured into four submodules, designed to comprehensively guide users through the complete workflow for RNA methylation analysis
Integrative Cell-Type-Specific Differential Methylation Analysis Pipeline
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