Disease Association Protein-Protein Link Evaluator (Broad hosted algorithm)

Genomic Identification of Significant Targets in Cancer

This is basic GenePattern module written in Python 3. It can be taken as a Template for future modules. (click 'Use this template' to get started)

GenePattern Hierarchical Clustering module.

Wraps the AmpliconSuite-pipeline workflow to identify one or more connected genomic regions which have copy number amplifications.

UMap or TSNE validation plots

Visualizes prediction results

Module for GSEA Julia Implementation

This a GenePattern Javascript visualizer that creates a CLS file from a GCT file.

Imports data from the Gene Expression Omnibus (GEO)

Actual creation of the Elastic Principa Graph in the STREAM scRNASeq Trajectory analysis, packaged as a GenePattern module

Detect differentially expressed genes between pairs of trajectory branches

A configurable heat map viewer that provides users with several options for manipulating and visualizing array-based data

GenePattern module wrapping igv.js

scVelo wrapper module for GenePattern

HTSeq (0.11.2) wrapper module: Counting reads in features with 'htseq-count'

Generate the signature subway and stream plots

Step one of the STREAM ssRNA-Seq Trajectory pipeline

Wrapper Script for Harmony designed to work with GenePattern Module Integrator

Views results of hierarchical clustering.