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simplitigs

Here are 2 public repositories matching this topic...

prophyle / prophyle

Accurate, resource-frugal and deterministic DNA sequence classifier.

bioinformatics metagenomics viruses bwt bacteria phylogeny metagenomic-classification burrows-wheeler-transform k-mers phylogenetic-compression simplitigs prophyle

Updated Feb 1, 2025
Python

prophyle / prophasm

ProphAsm – a rapid computation of simplitigs directly from k-mer sets

de-bruijn-graphs k-mers simplitigs prophyle

Updated Feb 17, 2023
C++

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