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relecov-tools
relecov-tools PublicForked from BU-ISCIII/relecov-tools
set of helper tools for the assembly of the different elements in the RELECOV platform (Spanish Network for genomic surveillance of SARS-Cov-2) as data download, processing, validation and upload t…
Python
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iskylims
iskylims PublicForked from BU-ISCIII/iskylims
is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
Python
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viralrecon
viralrecon PublicForked from BU-ISCIII/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
Nextflow
835 contributions in the last year
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Contribution activity
March 2025
Created 47 commits in 2 repositories
Created 1 repository
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Shettland/pikavirus
Nextflow
This contribution was made on Mar 24
Opened 11 pull requests in 4 repositories
BU-ISCIII/relecov-platform
5
merged
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Stop returning None when Json_data is empty
This contribution was made on Mar 19
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Fill non-registered dates with 0s in intranet data. Add dropdown menu for non-admin users
This contribution was made on Mar 14
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Filled non-existing dates in Lineage VOC, updated variants dashboard preview
This contribution was made on Mar 13
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Fixed wrong data in intranet and host-info, included new needle-plot in search_samples
This contribution was made on Mar 12
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Closing several issues pre-production deployment
This contribution was made on Mar 10
BU-ISCIII/pikavirus
4
merged
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First running version for QC and trimming
This contribution was made on Mar 26
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Changed placeholders to workflow, included initial params and cat_fastq
This contribution was made on Mar 25
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Added placeholders for assembly and mapping
This contribution was made on Mar 25
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included initial modules
This contribution was made on Mar 24
BU-ISCIII/buisciii-tools
1
merged
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Changed short_obx for middle_idx in 02-clean.sh
This contribution was made on Mar 27
BU-ISCIII/PikaVirus_OLD
1
closed
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Pikavirus dsl2
This contribution was made on Mar 24
Reviewed 19 pull requests in 5 repositories
BU-ISCIII/relecov-tools
8 pull requests
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Update
relecov_schema.json
andread-bioinfo-metadata
to v3.0.0This contribution was made on Mar 31 -
Fix no matching samples read bioinfo and add debug flag
This contribution was made on Mar 20
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Fix adding_ontology_to_enum when enum has no ontology
This contribution was made on Mar 19
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Fix viralrecon_filepaths Path in
read-bioinfo-metadata
ModuleThis contribution was made on Mar 18 -
Update
relecov_schema
to 3.0.0dev versionThis contribution was made on Mar 18 -
Fixed configuration to include mandatory values needed when interacting with Relecov API
This contribution was made on Mar 17
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Update
download
Module to Process Data by Laboratory COD and Project SubfolderThis contribution was made on Mar 17 -
Test SFTP Login by Updating Port Assignment in
wrapper_manager
This contribution was made on Mar 7
BU-ISCIII/relecov-platform
5 pull requests
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Fixed some plots and enhanced the display of long labels
This contribution was made on Mar 27
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Clarify titles, graphics names, labels along all the website
This contribution was made on Mar 19
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Some install fixes and one bug
This contribution was made on Mar 11
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Corrected bio_f_values calculation and schema filtering
This contribution was made on Mar 11
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Extend Database Refactoring: SampleStateHistory and MetadataValues Models Updates
This contribution was made on Mar 10
BU-ISCIII/iskylims
3 pull requests
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Fixed issues #348, #349, #350 and #351
This contribution was made on Mar 19
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Fix issue #338: Removed unnecessary hidden input, now stored in session
This contribution was made on Mar 18
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Fixed #339 and some doc enhancements
This contribution was made on Mar 18
BU-ISCIII/buisciii-tools
2 pull requests
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Added _02_filter_results.sh script to pikavirus template
This contribution was made on Mar 27
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Fixed script for prevent overwriting in loop
This contribution was made on Mar 11
BU-ISCIII/BU-ISCIII
1 pull request
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add setup guide for the nf-core hackathon
This contribution was made on Mar 21
Opened 7 issues in 1 repository
BU-ISCIII/relecov-platform
7
closed
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Adapt intranet samples-per-lab plot from admin to non-admin users
This contribution was made on Mar 14
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Fix wrong analysis percent in non-admin users intranet
This contribution was made on Mar 13
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Fill missing dates in intranet
This contribution was made on Mar 13
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Fill missing weeks with 0s in Lineage VOC plot
This contribution was made on Mar 13
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Fill all missing dates in plots with timelines
This contribution was made on Mar 13
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Update preview images in variants-dashboard
This contribution was made on Mar 12
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Incorrect hover information in Lineage-VOC
This contribution was made on Mar 4